CDS

Accession Number TCMCG057C17250
gbkey CDS
Protein Id XP_018484416.1
Location complement(join(12852887..12853451,12853543..12853637,12853796..12853877,12853964..12854068,12854240..12854397,12854495..12854569,12854662..12854702,12854787..12854863,12854941..12855069,12855512..12855582,12855676..12855771,12855871..12855966,12856173..12856343,12856644..12856730,12856812..12856889,12857140..12857304,12857413..12857562,12857688..12857750,12857857..12857976,12858049..12858240,12858436..12858512,12858607..12858709,12858781..12858975))
Gene LOC108855167
GeneID 108855167
Organism Raphanus sativus

Protein

Length 996aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA344915
db_source XM_018628914.1
Definition PREDICTED: 5'-3' exoribonuclease 2 [Raphanus sativus]

EGGNOG-MAPPER Annotation

COG_category AL
Description XRN 5'-3' exonuclease N-terminus
KEGG_TC -
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko00001        [VIEW IN KEGG]
ko01000        [VIEW IN KEGG]
ko03009        [VIEW IN KEGG]
ko03016        [VIEW IN KEGG]
ko03019        [VIEW IN KEGG]
ko03021        [VIEW IN KEGG]
KEGG_ko ko:K12619        [VIEW IN KEGG]
ko:K20553        [VIEW IN KEGG]
EC -
KEGG_Pathway ko03008        [VIEW IN KEGG]
ko03018        [VIEW IN KEGG]
ko04016        [VIEW IN KEGG]
map03008        [VIEW IN KEGG]
map03018        [VIEW IN KEGG]
map04016        [VIEW IN KEGG]
GOs GO:0000966        [VIEW IN EMBL-EBI]
GO:0000967        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0003824        [VIEW IN EMBL-EBI]
GO:0004518        [VIEW IN EMBL-EBI]
GO:0004527        [VIEW IN EMBL-EBI]
GO:0004532        [VIEW IN EMBL-EBI]
GO:0004534        [VIEW IN EMBL-EBI]
GO:0004540        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006364        [VIEW IN EMBL-EBI]
GO:0006396        [VIEW IN EMBL-EBI]
GO:0006401        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0008409        [VIEW IN EMBL-EBI]
GO:0009056        [VIEW IN EMBL-EBI]
GO:0009057        [VIEW IN EMBL-EBI]
GO:0009893        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010467        [VIEW IN EMBL-EBI]
GO:0010468        [VIEW IN EMBL-EBI]
GO:0010586        [VIEW IN EMBL-EBI]
GO:0010587        [VIEW IN EMBL-EBI]
GO:0010604        [VIEW IN EMBL-EBI]
GO:0010628        [VIEW IN EMBL-EBI]
GO:0016070        [VIEW IN EMBL-EBI]
GO:0016072        [VIEW IN EMBL-EBI]
GO:0016075        [VIEW IN EMBL-EBI]
GO:0016787        [VIEW IN EMBL-EBI]
GO:0016788        [VIEW IN EMBL-EBI]
GO:0016796        [VIEW IN EMBL-EBI]
GO:0016896        [VIEW IN EMBL-EBI]
GO:0019222        [VIEW IN EMBL-EBI]
GO:0019439        [VIEW IN EMBL-EBI]
GO:0022613        [VIEW IN EMBL-EBI]
GO:0034470        [VIEW IN EMBL-EBI]
GO:0034471        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0034655        [VIEW IN EMBL-EBI]
GO:0034660        [VIEW IN EMBL-EBI]
GO:0034661        [VIEW IN EMBL-EBI]
GO:0042254        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043632        [VIEW IN EMBL-EBI]
GO:0043633        [VIEW IN EMBL-EBI]
GO:0043634        [VIEW IN EMBL-EBI]
GO:0044085        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044248        [VIEW IN EMBL-EBI]
GO:0044260        [VIEW IN EMBL-EBI]
GO:0044265        [VIEW IN EMBL-EBI]
GO:0044270        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0046700        [VIEW IN EMBL-EBI]
GO:0048518        [VIEW IN EMBL-EBI]
GO:0048519        [VIEW IN EMBL-EBI]
GO:0048523        [VIEW IN EMBL-EBI]
GO:0050789        [VIEW IN EMBL-EBI]
GO:0050794        [VIEW IN EMBL-EBI]
GO:0060147        [VIEW IN EMBL-EBI]
GO:0060149        [VIEW IN EMBL-EBI]
GO:0060255        [VIEW IN EMBL-EBI]
GO:0060968        [VIEW IN EMBL-EBI]
GO:0060969        [VIEW IN EMBL-EBI]
GO:0065007        [VIEW IN EMBL-EBI]
GO:0071025        [VIEW IN EMBL-EBI]
GO:0071027        [VIEW IN EMBL-EBI]
GO:0071029        [VIEW IN EMBL-EBI]
GO:0071035        [VIEW IN EMBL-EBI]
GO:0071046        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0071840        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:0090305        [VIEW IN EMBL-EBI]
GO:0090501        [VIEW IN EMBL-EBI]
GO:0090503        [VIEW IN EMBL-EBI]
GO:0140098        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]
GO:1901361        [VIEW IN EMBL-EBI]
GO:1901575        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGGGAGTACCGTCGTTCTACAGATGGTTAATCGAGAGGTATCCATTGATTTTGCAAGATGTCATCGAAGAAGAACCCCTCGACGCCAAGGTTCGGGTCGATACTAGCAAACCTAATCCAAACGGCGTCGAGTATGACAATCTGTACCTCGACATGAACGGAATCATTCATCCTTGTTTCCATCCTGAAGACAGGGCTTCTCCAACAACCTTTTCGGAGGTGTTTCAATGTATGTTCGATTACATAGACAGACTTTTCGTCATGGTTCGACCTCGGAAGCTGTTATTCTTGGCTATTGATGGTGTTGCTCCAAGGGCTAAGATGAATCAACAAAGATCTAGAAGGTTTAGAGCTGCAAAAGATGCAGCAGAGGCCGCTGCTGAAGAAGAGCGACTGAGGCAAGAGTTTGAGAGTCAAGGGAAGAGGTTGCCTCCTAAACTGGACTCTCAAGTTTTTGACTCTAATGTTATTACTCCTGGAACGGAGTTCATGTCTACTCTCTCATTTGCGTTGCAATACTACATTCACGTCAGACTTAATTCTGACCCTGGTTGGAAAAATATTAAGGTTATCCTCTCAGATGCTAATGTTCCTGGTGAGGGCGAACACAAGATCATGTCTTACATACGTCTTCAAAAGAACCATCCTGGTTACAACCCCAACACTTGTCATTGTCTCTATGGTTTGGACGCGGACTTGATCATGCTGGCTTTGGCCACACACGAAGTTCATATTTCAATCCTTCGTGAGGTTGTTTTCACTCCTGGAGAACAAGACAAATGCTTCTTGTGTGGTCAACTTGGACACCGAGCAGCAGATTGTGAGGGCAAGGTTAAGAGGAAGGCAGGAGATTTGTTTGATAAATCTGAGACAAATGTGGTGGTTAAGAAGCCATACCAGTTCGTGAATATCTGGACGCTTCGAGAGTATTTGGAGCACGACATGCAGATACCTAACTCGCAACTGCAAAAACATTTGGACCGCATAATTGATGACTTCGTCTTCATCTGTTTTTTTGTTGGCAATGATTTCCTGCCACATATGCCTACACTGGAGATACGGGAGGGTGCTATAGAATTACTTATGTCTGTGTACAAGAAGGAGTTTGGATCAAGTGCAAGTTACCTAAGCAATGGAAGCAAGCTGAATTTAAAGAATGTGGAGCATTTTATCCAGGCCGTTGGGCTCTATGAAAATAATATATTTCAAAGGAGAGCACAAAACCACCAGAGGCAATCAGAAAGGTTTAGTCGTGACCGAGCTCAATCGAGCAGAAATTGTAACTATGACCCGGTTGTGCAACTAGATTCTTTTGTTGAAGTGTCCGATTCATTGCGTCCCTCATTGGACGATAACACTAGTGTGGCGAATGTGGAAACAGAATATAACATCAAAGAAGAAGAAATAGATAACAGTGAAGAATTGAAGTTTAAGCTTAAAAAACTGTTGCGCGAAAAATCAGATGGGTTCAGTTCAGGAAAAGGAGAAGAAGATAAGGTGAGGCTAGGTGTACAAGGATGGAGGGAGAGATACTATGAGGAAAAATTCATAGCTAAGACGATAGAGGAAATGGAACAAATACGCAAGGATGTTGTTTTGAAGTATACAGAAGGTCTTTGTTGGATAATGCATTACTATTATCATGGTGTTTGTTCATGGAATTGGTTTTATCCTTATCATTATGCACCTTTCGCGTCTGATCTCAAGTGCCTTGATAAGCTAGATATTAAGTTCGAACTAGGTTCCCCATTTAAACCATTCAATCAGCTTCTGGCAGTTCTGCCATCTGCAAGTGCACATGCTCTCCCAGAGTGTTTTAGGAAACTGATGACAGATCCAAATTCACCTATAGCTGAGTTTTATCCTCCCGATTTTGAGATTGACATGAATGGAAAGCGCTATTCTTGGCAGGGTATAGCAAAACTGCCTTTTATAGAAGAACAGCGTCTTCTGGATGCAGCCGCAAAAGTGGAGCACTCACTGACGAAGGAGGAAGTTCGAAGAAACAGTGTGTTGTCTGACATGCTCTTTGTGGTTTCATCTCATCCCCTTGCTGAGCTCATCCGTTCTCTCAGTAGCCGTACTATCAAATTGAGCAACAAAGAACGAGAAATAGCTACAGAAAAAATTGACCCTGGACTAAGTGAAGGGATGAATGGTTACTTAGCTTTATGTGGTGGAGATAGTCAGCCTTCATCTTTCAGGTCCCCCATCGAGGGGATGGAAGATGTATTAGCCAATCAAGTCATTTGTGCCATATACAAACTTCCAGATGATCTTAGAGGAACTGACATTGCTCGTCCACCTCCAGGAGTGGTGTTGCCTAAAAAGACTGTACAACTAGCGGATTTGAAAGGTGGAGCTAATCTATGGCATGAAGATGGTGATCGAAGACGAGCTCCTGCAAAGATTATAAAAATAAAGAGGTATAACCCACAAGGATCCATTACGGGGGATAGGCTTGGGAAGGCAGCGCACAGACTTGTGTTACAGACAATAGATTCCCAACCGGGTAAGACGCACATCAACTCGGAACCAGCATTGTGTCCGAATACTATATTCCACAACATTCAGGTGACGAAGAAAGTCGCATCATTCCGGGGGAGTGTGGTACAGAAGAAACACCCTCAGTGTGAGTTAGCTTTGAAGAAAAACAGAAGCCATCAAAGTGAATTCACCGAGGAGAAGACTGCATTCAGAAAGCGCAAGGAAAAGGAGAAAAGAGGGAGAAATTTGGCTAACAGAAGGGACAGAGCGAAGAATGAGCAGCAAGGAAACAAAGGAGAAAGCAATCTGGAAAACAAAAGGCGTCGAAGTGAAGTCAATGAGGACAACAGACTGGAACACAAAAGGCCTCGACCGACTGAGGAGAGAAACATAAACTCTGAGGGGAAGGAAGAAAACAAATGCGCTCAAGCTGAACTCACTGAGGAGGAGAAGAATGCAAAACGAAAGCTAAAGAAAAGGAGAAGACAGAAGAAAGACATTTAG
Protein:  
MGVPSFYRWLIERYPLILQDVIEEEPLDAKVRVDTSKPNPNGVEYDNLYLDMNGIIHPCFHPEDRASPTTFSEVFQCMFDYIDRLFVMVRPRKLLFLAIDGVAPRAKMNQQRSRRFRAAKDAAEAAAEEERLRQEFESQGKRLPPKLDSQVFDSNVITPGTEFMSTLSFALQYYIHVRLNSDPGWKNIKVILSDANVPGEGEHKIMSYIRLQKNHPGYNPNTCHCLYGLDADLIMLALATHEVHISILREVVFTPGEQDKCFLCGQLGHRAADCEGKVKRKAGDLFDKSETNVVVKKPYQFVNIWTLREYLEHDMQIPNSQLQKHLDRIIDDFVFICFFVGNDFLPHMPTLEIREGAIELLMSVYKKEFGSSASYLSNGSKLNLKNVEHFIQAVGLYENNIFQRRAQNHQRQSERFSRDRAQSSRNCNYDPVVQLDSFVEVSDSLRPSLDDNTSVANVETEYNIKEEEIDNSEELKFKLKKLLREKSDGFSSGKGEEDKVRLGVQGWRERYYEEKFIAKTIEEMEQIRKDVVLKYTEGLCWIMHYYYHGVCSWNWFYPYHYAPFASDLKCLDKLDIKFELGSPFKPFNQLLAVLPSASAHALPECFRKLMTDPNSPIAEFYPPDFEIDMNGKRYSWQGIAKLPFIEEQRLLDAAAKVEHSLTKEEVRRNSVLSDMLFVVSSHPLAELIRSLSSRTIKLSNKEREIATEKIDPGLSEGMNGYLALCGGDSQPSSFRSPIEGMEDVLANQVICAIYKLPDDLRGTDIARPPPGVVLPKKTVQLADLKGGANLWHEDGDRRRAPAKIIKIKRYNPQGSITGDRLGKAAHRLVLQTIDSQPGKTHINSEPALCPNTIFHNIQVTKKVASFRGSVVQKKHPQCELALKKNRSHQSEFTEEKTAFRKRKEKEKRGRNLANRRDRAKNEQQGNKGESNLENKRRRSEVNEDNRLEHKRPRPTEERNINSEGKEENKCAQAELTEEEKNAKRKLKKRRRQKKDI